miRBase entry: api-mir-275

Stem-loop api-mir-275


Accession
MI0013921
Description
Acyrthosiphon pisum api-mir-275 precursor miRNA
Gene family
MIPF0000187; mir-275

Literature search
1 open access papers mention api-mir-275
(5 sentences)

Sequence

ggcugcuacaggcacucuuagacucuuuaauguugacgaagUCAGGUACCUGAAGUAGCGCG
.((((((.((((.((.((..(((((.(((....))).).)))))))).)))).))))))...

Structure
--g      a    c  u  ua    - u   a 
   gcugcu cagg ac cu  gacu c uua u
   |||||| |||| || ||  |||| | |||  
   CGAUGA GUCC UG GA  CUga g agu g
GCG      A    A  -  --    a c   u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL350222.1: 161796-161857 [+]

Database links

Mature api-miR-275

Accession MIMAT0014721
Description Acyrthosiphon pisum api-miR-275 mature miRNA
Sequence 42 - UCAGGUACCUGAAGUAGCGCG - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281