miRBase entry: api-mir-316

Stem-loop api-mir-316


Accession
MI0013933
Description
Acyrthosiphon pisum api-mir-316 precursor miRNA
Gene family
MIPF0000254; mir-316

Literature search
1 open access papers mention api-mir-316
(2 sentences)

Sequence

UGUCUUUUUCCGCUUUGCUGCCGaaguguaaauacgauuugacagcaaagugaaagagacug
.(((((((((.(((((((((.((((.(((....))).)))).))))))))))))))))))..

Structure
-U         C         C    g   a 
  GUCUUUUUC GCUUUGCUG CGaa ugu a
  ||||||||| ||||||||| |||| |||  
  cagagaaag ugaaacgac guuu gca a
gu         -         a    a   u 


Annotation confidence Not enough data
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Genome context
GL349950.1: 102463-102524 [+]

Database links

Mature api-miR-316

Accession MIMAT0014731
Description Acyrthosiphon pisum api-miR-316 mature miRNA
Sequence 1 - UGUCUUUUUCCGCUUUGCUGCCG - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281