miRBase entry: api-mir-3031

Stem-loop api-mir-3031


Accession
MI0013974
Description
Acyrthosiphon pisum api-mir-3031 precursor miRNA


Sequence

gggaaauuuguuaagaagcaaaguguuaaauauuccUUGCUUUUUAACAAGUUUCACUA
((((((((((((((((((((((((((...)))))..))))))))))))))))))).)).

Structure
-  -                   --     u 
 gg gaaauuuguuaagaagcaa  agugu  
 || |||||||||||||||||||  ||||| a
 UC CUUUGAACAAUUUUUCGUU  uuaua  
A  A                   cc     a 


Annotation confidence Not enough data
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Genome context
GL350343.1: 72875-72933 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from api-mir-3031
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-3031

Accession MIMAT0014767
Description Acyrthosiphon pisum api-miR-3031 mature miRNA
Sequence 37 - UUGCUUUUUAACAAGUUUCACUA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281