miRBase entry: api-mir-252b

Stem-loop api-mir-252b


Accession
MI0013981
Description
Acyrthosiphon pisum api-mir-252b precursor miRNA

Literature search
1 open access papers mention api-mir-252b
(1 sentences)

Sequence

CUAAGUAGUAGCGCCAACGGUGAauugauuuuaaauaugucaccugcguacuacugcuuacca
.((((((((((.((((..(((((..((........))..))))))).)).))))))))))...

Structure
--C          C  -  AC     au  auu 
   UAAGUAGUAG GC CA  GGUGA  ug   u
   |||||||||| || ||  |||||  ||    
   auucgucauc ug gu  ccacu  au   u
acc          a  c  --     gu  aaa 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL349872.1: 513369-513431 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from api-mir-252b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature api-miR-252b

Accession MIMAT0014772
Description Acyrthosiphon pisum api-miR-252b mature miRNA
Sequence 1 - CUAAGUAGUAGCGCCAACGGUGA - 23
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281