miRBase entry: api-mir-3017b-1

Stem-loop api-mir-3017b-1


Accession
MI0013998
Description
Acyrthosiphon pisum api-mir-3017b-1 precursor miRNA
Gene family
MIPF0001107; mir-3017


Sequence

ccguguucugugacugacucggcuggcaacggacugagcccucCGGUCUGUCACGGAACACGGGA
((((((((((((((.(((.(((..(((..........)))..)))))).))))))))))))))..

Structure
--              u   u   cu   aacg 
  ccguguucugugac gac cgg  ggc    g
  |||||||||||||| ||| |||  |||     
  GGCACAAGGCACUG CUG GCc  ccg    a
AG              U   -   uc   aguc 


Annotation confidence Not enough data
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Genome context
GL349670.1: 628441-628505 [+]

Database links

Mature api-miR-3017b

Accession MIMAT0014783
Description Acyrthosiphon pisum api-miR-3017b mature miRNA
Sequence 44 - CGGUCUGUCACGGAACACGGGA - 65
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20444247
    Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum
    Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S
    BMC Genomics (2010) 11:281