miRBase entry: mmu-mir-3072

Stem-loop mmu-mir-3072


Accession
MI0014035
Symbol
MGI: Mir3072
Description
Mus musculus mmu-mir-3072 precursor miRNA
Gene family
MIPF0001410; mir-3072

Literature search
4 open access papers mention mmu-mir-3072
(18 sentences)

Sequence

1443 reads, 122 reads per million, 54 experiments
gggcuguugagugcgAGGGACCCCGAGGGAGGGCAGGcugccccaggcccUGCCCCCUCCAGGAAGCCUUCUugcuccagccc
((((((..(((((.(((((...((..(((.(((((((..(((...)))))))))).)))..))...))))).)))))))))))

Structure
      uu     c     ACC  GA   A       cu   c 
gggcug  gagug gAGGG   CC  GGG GGGCAGG  gcc  
||||||  ||||| |||||   ||  ||| |||||||  ||| c
cccgac  cucgu CUUCC   GG  CUC CCCGUcc  cgg  
      --     U     GAA  AC   C       --   a 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr12: 109747878-109747960 [+]
Clustered miRNAs
8 other miRNAs are < 10 kb from mmu-mir-3072
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-3072-5p

Accession MIMAT0014852
Description Mus musculus mmu-miR-3072-5p mature miRNA
Sequence 16 - AGGGACCCCGAGGGAGGGCAGG - 37
Evidence experimental
Illumina [1-2]
Database links
Predicted targets

Mature mmu-miR-3072-3p

Accession MIMAT0014853
Description Mus musculus mmu-miR-3072-3p mature miRNA
Sequence 51 - UGCCCCCUCCAGGAAGCCUUCU - 72
Evidence experimental
Illumina [1-2]
Database links
Predicted targets

References

  1. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  2. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009