Stem-loop sequence mmu-mir-344e

Accession

MI0014094 (change log)

Symbol

MGI:Mir344e

Description

Mus musculus miR-344e stem-loop

Gene family

MIPF0000267; mir-344

Literature search

10 open access papers mention mmu-mir-344e
(34 sentences)

Stem-loop

   ---c          c   c     u        u 
5'     agucaggcuu ugg uauau ccaggacu a
       |||||||||| ||| ||||| |||||||| c
3'     ucaguccgaa acc auaua gguccugg c
   uaua          -   a     -        u 

Deep sequencing

59 reads, 0 reads per million, 16 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCm38; GCA_000001635.2): chr7: 61735537-61735602 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mmu-mir-344e

• mmu-mir-344h-2: chr7: 61742366-61742425 [-]
• mmu-mir-344h-1: chr7: 61739350-61739409 [-]
• mmu-mir-344e: chr7: 61735537-61735602 [-]
• mmu-mir-344d-3: chr7: 61726249-61726328 [-]

Database links

• EntrezGene:Mir344e
• MGI:Mir344e
• RNAcentral:URS000075E3E8_10090
• miRBase Tracker:MI0014094

Mature sequence mmu-miR-344e-5p

• Accession: MIMAT0014923
• Previous IDs: mmu-miR-344e*
• Sequence: 5 - caggcuucuggcuauauucc - 24
• Deep sequencing: 22 reads, 9 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetScanVert:mmu-miR-344e-5p
  • miRDB:mmu-miR-344e-5p

Mature sequence mmu-miR-344e-3p

• Accession: MIMAT0014924
• Previous IDs: mmu-miR-344e
• Sequence: 43 - gauauaaccaaagccugacuau - 64
• Deep sequencing: 37 reads, 13 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000381825_10090
• Predicted targets:
  • TargetScanVert:mmu-miR-344e-3p
  • miRDB:mmu-miR-344e-3p

References

1. PMID:20413612 "Mammalian microRNAs: experimental evaluation of novel and previously annotated genes" Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP Genes Dev. 24:992-1009(2010).