miRBase entry: bmo-mir-3204a

Stem-loop bmo-mir-3204a


Accession
MI0014256
Description
Bombyx mori bmo-mir-3204a precursor miRNA
Gene family
MIPF0000908; mir-3204


Sequence

19 reads, 7 reads per million, 3 experiments
gcaagaaucaauguagacaucaaggccCGCGUCAUAAACUUCCCAUAUgauuucccaUAUGGGAGUUUAUGACUUAGGcuucguugccucugucgucaccgucuuga
.(((((....(((((((((.(.(((((...((((((((((.((((((((......))))))))))))))))))...))))).).))..)))).))).....))))).

Structure
g     -auca   -    --  u a     CGC          U        au 
 caaga     aug uaga  ca c aggcc   GUCAUAAACU CCCAUAUg  u
 |||||     ||| ||||  || | |||||   |||||||||| ||||||||   
 guucu     ugc gucu  gu g uucGG   CAGUAUUUGA GGGUAUac  u
a     gccac   u    cc  u c     AUU          -        cc 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
NW_004582015.1: 5517228-5517334 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3204a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3204a-5p

Accession MIMAT0015381
Description Bombyx mori bmo-miR-3204a-5p mature miRNA
Sequence 28 - CGCGUCAUAAACUUCCCAUAU - 48
Evidence experimental
SOLID [1]
Database links

Mature bmo-miR-3204a-3p

Accession MIMAT0015382
Description Bombyx mori bmo-miR-3204a-3p mature miRNA
Sequence 58 - UAUGGGAGUUUAUGACUUAGG - 78
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415