miRBase entry: bmo-mir-2808e

Stem-loop bmo-mir-2808e


Accession
MI0014289
Description
Bombyx mori bmo-mir-2808e precursor miRNA
Gene family
MIPF0000836; mir-2808

Literature search
1 open access papers mention bmo-mir-2808e
(1 sentences)

Sequence

407 reads, 51 reads per million, 3 experiments
agcucacggggcucaaaccgaagugcuucgcagaaucuaccaccgggucgguagcgcgacccacUGAGAAGAUCCGGUGAGUAACUcagugggcugugucuauggguua
((((((..((((.((..(((.((((((.(((.(.((((.(((..((((((......))))))..)).).)))).).)))))).)))...)))..)).)))).)))))).

Structure
-      cg    u  aa   --a   -   u   a a    a -  cc      gu 
 agcuca  gggc ca  ccg   agu gcu cgc g aucu c ca  gggucg  a
 ||||||  |||| ||  |||   ||| ||| ||| | |||| | ||  ||||||   
 uugggu  ucug gu  ggu   UCA UGA GUG C UAGA G GU  cccagc  g
a      -a    u  cg   gac   A   -   G C    A A  ca      gc 


Annotation confidence Not enough data
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Genome context
NW_004581762.1: 604257-604365 [+]

Database links

Mature bmo-miR-2808e

Accession MIMAT0015417
Description Bombyx mori bmo-miR-2808e mature miRNA
Sequence 65 - UGAGAAGAUCCGGUGAGUAACU - 86
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415