miRBase entry: bmo-mir-3242

Stem-loop bmo-mir-3242


Accession
MI0014297
Description
Bombyx mori bmo-mir-3242 precursor miRNA


Sequence

28 reads, 2 reads per million, 3 experiments
ccagaagucuuccauaaucauucuaguugcuucagggaaaCCUUUGCCUUCAUCUUCUGCAACUUguuguagaguucuuacagcaaggaacggagccgaagcaguuccaaauguuacccaaagcaaucugaaaucuuugacuuua
...((((((...........(((..(((((((..(((.(((.((((.((((...(((((...((((((((((.....))))))))))...)))))..))))......)))).))).))).)))))))..)))......)))))).

Structure
cca      uuccauaauca   ua       ca   a   C    -----C    AUC     CAA          a 
   gaaguc           uuc  guugcuu  ggg aaC UUUG      CUUC   UUCUG   CUUguuguag g
   ||||||           |||  |||||||  ||| ||| ||||      ||||   |||||   |||||||||| u
   uuucag           aag  uaacgaa  ccc uug aaac      gaag   gaggc   gaacgacauu u
--a      -----uuucua   uc       -a   a   u    cuugac    -cc     aag          c 


Annotation confidence Not enough data
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Genome context
NW_004581687.1: 2446453-2446597 [-]

Database links

Mature bmo-miR-3242

Accession MIMAT0015424
Description Bombyx mori bmo-miR-3242 mature miRNA
Sequence 41 - CCUUUGCCUUCAUCUUCUGCAACUU - 65
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415