miRBase entry: bmo-mir-3330

Stem-loop bmo-mir-3330


Accession
MI0014388
Description
Bombyx mori bmo-mir-3330 precursor miRNA


Sequence

reads, None reads per million, experiments
uuucaguaccccaucucgcgacgcgcuaucgacgcgucacuuucggggugucccuugaucuguauguUACCGUAGUGAAAGCGCUCCACGAauuguuccuauuggu
..((((((...((..(((.(..(((((.((((((.((.((..((((((....)))))).......)).)))))..))).)))))..).)))..))....)))))).

Structure
uu      -ccc  uc   c ac     a   --   c  c  -----uu      u 
  ucagua    ca  ucg g  gcgcu ucg  acg gu ac       ucgggg g
  ||||||    ||  ||| |  ||||| |||  ||| || ||       ||||||  
  gguuau    gu  AGC C  CGCGA AGU  UGC CA ug       aguucc u
-u      ccuu  ua   A CU     A   GA   -  U  uaugucu      c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
NW_004622361.1: 320-425 [+]

Database links

Mature bmo-miR-3330

Accession MIMAT0015518
Description Bombyx mori bmo-miR-3330 mature miRNA
Sequence 68 - UACCGUAGUGAAAGCGCUCCACGA - 91
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415