miRBase entry: bmo-mir-3394

Stem-loop bmo-mir-3394


Accession
MI0014457
Description
Bombyx mori bmo-mir-3394 precursor miRNA


Sequence

1 reads, 0 reads per million, 1 experiments
ucggcguccucgUACAAUCGCCUUCCGGGUGCCUUGAugauucgggagccccaagcgacauguuucgcauugagguccccaaccaccaaggccggauggcgaucaugguucaaggcccgucu
.(((.(.(((.(..((((((((.((((...((((((.((.((.(((.(((.(((((((......)))).))).))).))))).)).)))))))))).))))))..))...).)))))))...

Structure
--u   c u   c -UA  --      U    GGU      A  a  c   a   c   -    ca 
   cgg g ccu g   CA  AUCGCC UCCG   GCCUUG ug uu ggg gcc caa gcga  u
   ||| | ||| |   ||  |||||| ||||   |||||| || || ||| ||| ||| ||||   
   gcc c gga c   gu  uagcgg aggc   cggaac ac aa ccc ugg guu cgcu  g
ucu   - -   a uug  ac      u    ---      c  c  -   c   a   a    uu 


Annotation confidence Not enough data
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Genome context
NW_004581756.1: 226007-226128 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from bmo-mir-3394
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3394

Accession MIMAT0015598
Description Bombyx mori bmo-miR-3394 mature miRNA
Sequence 13 - UACAAUCGCCUUCCGGGUGCCUUGA - 37
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415