miRBase entry: bmo-mir-3400

Stem-loop bmo-mir-3400


Accession
MI0014463
Description
Bombyx mori bmo-mir-3400 precursor miRNA


Sequence

5 reads, 1 reads per million, 1 experiments
cgugcagaGCAGCUUGCAAGUCAUUUUCUUAGgccccccucgccgguccccagaccgacaugugagggggacccgaaacacuuagaggguuguuguaccugggcgg
(((.(((((((((((.(((((...((((...((.((((((((((((((....)))))....))))))))).)).)))).)))).).))))))))....))).))).

Structure
-   g   ----        G -    CAU    UUA  c         ----     c 
 cgu cag    aGCAGCUU C AAGU   UUUC   Gg cccccucgc    cgguc c
 ||| |||    |||||||| | ||||   ||||   || |||||||||    |||||  
 gcg guc    uuguuggg g uuca   aaag   cc gggggagug    gccag c
g   g   caug        a a    --c    --c  a         uaca     a 


Annotation confidence Not enough data
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Genome context
NW_004581840.1: 73681-73786 [-]

Database links

Mature bmo-miR-3400

Accession MIMAT0015604
Description Bombyx mori bmo-miR-3400 mature miRNA
Sequence 9 - GCAGCUUGCAAGUCAUUUUCUUAG - 32
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415