miRBase entry: bmo-mir-3404

Stem-loop bmo-mir-3404


Accession
MI0014468
Description
Bombyx mori bmo-mir-3404 precursor miRNA


Sequence

98 reads, 35 reads per million, 3 experiments
ugaaagacauuguuuuuacauucccaucgucacaauauuuaguguaaaugcgguaaagauuugaaauguuuuuaaacucacuugguaaauaaagucgaguUGAAUCUUUUCUGCAAUAGUGUGACgguacuaaaggcaguaacuua
...(((..((((((((((.......(((((((((.(((..........(((((.((((((((............(((((((((........)))).))))))))))))).)))))))).)))))))))..))))))))))..))).

Structure
uga   ac          cauuccc         a   uuaguguaaa     u        gaaauguuuuua     -    ggu 
   aag  auuguuuuua       aucgucaca uau          ugcgg aaagauuu            aacuc acuu   a
   |||  ||||||||||       ||||||||| |||          ||||| ||||||||            ||||| ||||    
   uuc  ugacggaaau       uggCAGUGU AUA          ACGUC UUUCUAAG            Uugag ugaa   a
--a   aa          -----ca         G   ----------     U        ------------     c    aua 


Annotation confidence Not enough data
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Genome context
NW_004581825.1: 112200-112345 [+]

Database links

Mature bmo-miR-3404

Accession MIMAT0015609
Description Bombyx mori bmo-miR-3404 mature miRNA
Sequence 101 - UGAAUCUUUUCUGCAAUAGUGUGAC - 125
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415