miRBase entry: bmo-mir-3406

Stem-loop bmo-mir-3406


Accession
MI0014470
Description
Bombyx mori bmo-mir-3406 precursor miRNA


Sequence

185 reads, 41 reads per million, 3 experiments
cguucgcauauuuagaugaugugauaaUAGUAAGUAGCACGUUUGAUGAGCAuguuagucuucuucuUCGCGUGUUAGACAAGCUGCGCCAUGCUaaucuaacaauuaauuuagaaaagugugaauu
.((((((((.(((((((..(((.....(((((.(..(((.(((((...(((((((.((.......))..)))))))...))))))))..).))))).....)))....)))))))...)))))))).

Structure
c        --a       --ga   gauaa     A UA   C     AUG       -u  uc 
 guucgcau   uuuagau    ugu     UAGUA G  GCA GUUUG   AGCAugu  ag  u
 ||||||||   |||||||    |||     ||||| |  ||| |||||   |||||||  ||  u
 uaagugug   agauuua    aca     aUCGU C  CGU CGAAC   UUGUGCG  uc  c
u        aaa       auua   aucua     A CG   -     AGA       CU  uu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
NW_004581707.1: 1075057-1075183 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3406
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3406-5p

Accession MIMAT0015611
Description Bombyx mori bmo-miR-3406-5p mature miRNA
Sequence 28 - UAGUAAGUAGCACGUUUGAUGAGCA - 52
Evidence experimental
SOLID [1]
Database links

Mature bmo-miR-3406-3p

Accession MIMAT0015612
Description Bombyx mori bmo-miR-3406-3p mature miRNA
Sequence 68 - UCGCGUGUUAGACAAGCUGCGCCAUGCU - 95
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415