miRBase entry: bmo-mir-3421

Stem-loop bmo-mir-3421


Accession
MI0014486
Description
Bombyx mori bmo-mir-3421 precursor miRNA


Sequence

aaacagccgaauucgcaauaguuguuggcgugcuuUCAAACGAAUUAAAUCAGAGGUCUuugguagugaagcgacacucauuacugcaccaauguuauuagguauguuugauguugaaacaaaaguuacuauuguaagugucgcuagug
..(((((...(((.((((((((..(((....((..(((((((..((((..((..(((...(((((((((........))))))))).)))..))...))))...))))))).)).....))).....)))))))).)))...))).)).

Structure
aa  -   cga   c        ---ug   -gcgu  uu       -AA    -AU  GA   CUu         agc 
  ac agc   auu gcaauagu     uug     gc  UCAAACG   UUAA   CA  GGU   ugguaguga   g
  || |||   ||| ||||||||     |||     ||  |||||||   ||||   ||  |||   |||||||||    
  ug ucg   uga uguuauca     aac     ug  aguuugu   gauu   gu  cca   gucauuacu   a
-g  a   cug   a        uugaa   aaagu  -u       aug    auu  aa   --c         cac 


Annotation confidence Not enough data
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Genome context
NW_004582026.1: 5987644-5987792 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bmo-mir-3421
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bmo-miR-3421

Accession MIMAT0015629
Description Bombyx mori bmo-miR-3421 mature miRNA
Sequence 36 - UCAAACGAAUUAAAUCAGAGGUCU - 59
Evidence experimental
SOLID [1]

References

  1. PubMed ID: 20229201
    Novel microRNAs in silkworm (Bombyx mori)
    "Cai Y, Yu X, Zhou Q, Yu C, Hu H, Liu J, Lin H, Yang J, Zhang B, Cui P, Hu S, Yu J"
    "Funct Integr Genomics (2010) 10:405-415