miRBase entry: aly-MIR157a

Stem-loop aly-MIR157a


Accession
MI0014510
Description
Arabidopsis lyrata aly-MIR157a precursor miRNA
Gene family
MIPF0000008; MIR156


Sequence

196 reads, 6834 reads per million, 1 experiments
gaggcauugagagugUUGACAGAAGAUAGAGAGCACagaugauaagauacaauucggagcaguuucuuugcaucuuacuccuuuguGCUCUCUAGCCUUCUGUCAUCAccuuuuauuugcuuu
((((((.((((((((.(((((((((.(((((((((((((.((((((((.(((...((((....))))))).)))))).)).)))))))))))))..))))))))).)).))))))..))))))

Structure
      -u      -  U         -A             u  -      a   uuc    c 
gaggca  ugagag ug UGACAGAAG  UAGAGAGCACaga ga uaagau caa   ggag a
||||||  |||||| || |||||||||  ||||||||||||| || |||||| |||   ||||  
uuucgu  auuuuc AC ACUGUCUUC  AUCUCUCGuguuu cu auucua guu   ucuu g
      uu      c  U         CG             c  c      c   ---    u 


Annotation confidence Not enough data
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Genome context
GL348714.1: 11818143-11818265 [-]

Database links

Mature aly-miR157a-5p

Accession MIMAT0017413
Description Arabidopsis lyrata aly-miR157a-5p mature miRNA
Sequence 16 - UUGACAGAAGAUAGAGAGCAC - 36
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR157a-3p

Accession MIMAT0017414
Description Arabidopsis lyrata aly-miR157a-3p mature miRNA
Sequence 87 - GCUCUCUAGCCUUCUGUCAUCA - 108
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103