miRBase entry: aly-MIR157b

Stem-loop aly-MIR157b


Accession
MI0014511
Description
Arabidopsis lyrata aly-MIR157b precursor miRNA
Gene family
MIPF0000008; MIR156


Sequence

196 reads, 6834 reads per million, 1 experiments
gugUUGACAGAAGAUAGAGAGCACagaugagaagauacaauucuucgcagcuucuuugcaucuuacuccuuuguGCUCUCUAAGCUUCUGUCAUCAc
(((.(((((((((.(((((((((((((.((((((((.(((...............))).))))).))).)))))))))))))..))))))))).)))

Structure
   U         -A             u   -     a   uucuuc 
gug UGACAGAAG  UAGAGAGCACaga gag aagau caa      g
||| |||||||||  ||||||||||||| ||| ||||| |||      c
cAC ACUGUCUUC  AUCUCUCGuguuu cuc uucua guu      a
   U         GA             c   a     c   ucuucg 


Annotation confidence Not enough data
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Genome context
GL348714.1: 11846007-11846103 [+]

Database links

Mature aly-miR157b-5p

Accession MIMAT0017415
Description Arabidopsis lyrata aly-miR157b-5p mature miRNA
Sequence 4 - UUGACAGAAGAUAGAGAGCAC - 24
Evidence experimental
Illumina [1]
Database links

Mature aly-miR157b-3p

Accession MIMAT0017416
Description Arabidopsis lyrata aly-miR157b-3p mature miRNA
Sequence 75 - GCUCUCUAAGCUUCUGUCAUCA - 96
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089