miRBase entry: aly-MIR158a

Stem-loop aly-MIR158a


Accession
MI0014514
Description
Arabidopsis lyrata aly-MIR158a precursor miRNA
Gene family
MIPF0000294; MIR158


Sequence

290 reads, 10112 reads per million, 1 experiments
acgucaucucugugcuuCUUUGUCUACAAUUUUGGAAAaaguggugacgccauugcucuuUCCCAAAUGUAGACAAAGCAauaccgugaugacgu
((((((((.(.(((...(((((((((((.(((.(((((.(((((((....))))))).))))).))))))))))))))...))).).))))))))

Structure
        u u   cuu           A   U     a       a 
acgucauc c gug   CUUUGUCUACA UUU GGAAA aguggug c
|||||||| | |||   ||||||||||| ||| ||||| |||||||  
ugcaguag g cau   GAAACAGAUGU AAA CCUuu ucguuac g
        u c   aAC           -   C     c       c 


Annotation confidence High
Do you think this miRNA is real?

Genome context
GL348715.1: 4310355-4310449 [-]

Database links

Mature aly-miR158a-5p

Accession MIMAT0017421
Description Arabidopsis lyrata aly-miR158a-5p mature miRNA
Sequence 18 - CUUUGUCUACAAUUUUGGAAA - 38
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR158a-3p

Accession MIMAT0017422
Description Arabidopsis lyrata aly-miR158a-3p mature miRNA
Sequence 61 - UCCCAAAUGUAGACAAAGCA - 80
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103