miRBase entry: aly-MIR160a

Stem-loop aly-MIR160a


Accession
MI0014521
Description
Arabidopsis lyrata aly-MIR160a precursor miRNA
Gene family
MIPF0000032; MIR160


Sequence

126 reads, 4393 reads per million, 1 experiments
cgccuauacauguauauagauguauauguauuauauauguaUGCCUGGCUCCCUGUAUGCCAuaugcugagcucaucgaguaucgaugaccuccguggaugGCGUAUGAGGAGCCAUGCAUAuccucauacauauauauacauaauuaugugauggug
((((..((((((.......((((((((((((.......((((((.(((((((.((((((((((..((.(((.(((((((...))))))).))).))..)))))))))).))))))).))))))....)))))))))))).......))))))..))))

Structure
    ua      uauauag            uauauau      C       C          au  u   c       g 
cgcc  uacaug       auguauauguau       guaUGC UGGCUCC UGUAUGCCAu  gc gag ucaucga  
||||  ||||||       ||||||||||||       |||||| ||||||| ||||||||||  || ||| ||||||| u
gugg  guguau       uauauauacaua       uAUACG ACCGAGG GUAUGCGgua  ug cuc aguagcu  
    ua      uaauaca            ---cucc      U       A          gg  c   c       a 


Annotation confidence Not enough data
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Genome context
GL348716.1: 18997241-18997398 [+]

Database links

Mature aly-miR160a-5p

Accession MIMAT0017435
Description Arabidopsis lyrata aly-miR160a-5p mature miRNA
Sequence 42 - UGCCUGGCUCCCUGUAUGCCA - 62
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR160a-3p

Accession MIMAT0017436
Description Arabidopsis lyrata aly-miR160a-3p mature miRNA
Sequence 102 - GCGUAUGAGGAGCCAUGCAUA - 122
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103