miRBase entry: aly-MIR166c

Stem-loop aly-MIR166c


Accession
MI0014534
Description
Arabidopsis lyrata aly-MIR166c precursor miRNA
Gene family
MIPF0000004; MIR166


Sequence

114 reads, 3975 reads per million, 1 experiments
gguugagaGGAAUGUUGUCUGGCUCGAGGucaugaaggagaggauaucacuccaauuaauuuggaagaacgaauuaagaaacccuaaaugauucUCGGACCAGGCUUCAUUCCCCcuaacc
(((((.(.((((((..((((((.((((((((((..(((...(((......)))..((((((((......)))))))).....)))..)))).)))))).))))))..)))))).).)))))

Structure
     a a      UU      C      -    ga   agaggauaucacuccaa        ga 
gguug g GGAAUG  GUCUGG UCGAGG ucau  agg                 uuaauuug  a
||||| | ||||||  |||||| |||||| ||||  |||                 ||||||||   
ccaau C CCUUAC  CGGACC GGCUcu agua  ucc                 aauuaagc  g
     c C      UU      A      u    aa   ------------caaag        aa 


Annotation confidence Not enough data
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Genome context
GL348718.1: 3626989-3627109 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR166c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR166c-5p

Accession MIMAT0017463
Description Arabidopsis lyrata aly-miR166c-5p mature miRNA
Sequence 9 - GGAAUGUUGUCUGGCUCGAGG - 29
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR166c-3p

Accession MIMAT0017464
Description Arabidopsis lyrata aly-miR166c-3p mature miRNA
Sequence 95 - UCGGACCAGGCUUCAUUCCCC - 115
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103