miRBase entry: aly-MIR168a

Stem-loop aly-MIR168a


Accession
MI0014543
Description
Arabidopsis lyrata aly-MIR168a precursor miRNA
Gene family
MIPF0000081; MIR168


Sequence

307 reads, 10704 reads per million, 1 experiments
gagucucaccgucgggcucggauUCGCUUGGUGCAGGUCGGGAAccaauucggcugacacagccucgugacuuuaaaaccuuuauugguuugugagcagggauuggauCCCGCCUUGCAUCAACUGAAUcggauccccgagguguaagaaaacuc
((((((((((.(((((.((.((((((.((((((((((.(((((.((((((((((((...)))))...((.(((..(((((......)))))..))))).))))))).))))).)))))))))).)))))).))..)))))))))..)))...)))

Structure
   ---   --    g     -c  g      C          U     A       ggcugacacagccucg  a   ua     uu 
gag   ucu  cacc ucggg  uc gauUCG UUGGUGCAGG CGGGA ccaauuc                ug cuu  aaacc  u
|||   |||  |||| |||||  || |||||| |||||||||| ||||| |||||||                || |||  |||||   
cuc   aga  gugg agccc  ag cUAAGU AACUACGUUC GCCCu gguuagg                ac gag  uuugg  a
   aaa   au    -     cu  g      C          C     a       ---------------g  -   ug     uu 


Annotation confidence High
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Genome context
GL348719.1: 10245606-10245760 [-]

Database links

Mature aly-miR168a-5p

Accession MIMAT0017481
Description Arabidopsis lyrata aly-miR168a-5p mature miRNA
Sequence 24 - UCGCUUGGUGCAGGUCGGGAA - 44
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR168a-3p

Accession MIMAT0017482
Description Arabidopsis lyrata aly-miR168a-3p mature miRNA
Sequence 109 - CCCGCCUUGCAUCAACUGAAU - 129
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103