miRBase entry: aly-MIR169a

Stem-loop aly-MIR169a


Accession
MI0014545
Description
Arabidopsis lyrata aly-MIR169a precursor miRNA
Gene family
MIPF0000037; MIR169_2


Sequence

55 reads, 1918 reads per million, 1 experiments
aacgcguaugugacgaaaguagugugCAGCCAAGGAUGACUUGCCGAuuuaaaugaucuuucuuuauacucuauuaagacauuuuaaguuucaaauuucuuugguucuucaaggauuaaggaagaaaguaggcuauauauguagauauauauauuaugcuguauuaaauauauguacaagauaagaccaaaaaagaaaaaguaacaaucaugaucGGCAAGUUGUCCUUGGCUACAcguuacuuugugucgcgcauagguguu
(((((.((((((.(((((((((((((.((((((((((((((((((((((...(((((.(((((((....(((....))).......(.((((....((((((((((((...)))))))))))))))).).((((.(((.((((.((((((((((......))))...)))))).))))..))))).))...)))))))........))))))))))))))))))))))))))).))))))))))....))))))))).)))))

Structure
     g      a   ----          C                      uaa     -------c       auacucuauuaagacauuuuaaguuucaaauuucuuugguucuucaaggauuaaggaagaaagua  -  a   -a    g      ---    ua 
aacgc uaugug cga    aaguagugug AGCCAAGGAUGACUUGCCGAuu   augau        uuucuuu                                                                 gg cu uau  ugua auauau   auau  u
||||| |||||| |||    |||||||||| ||||||||||||||||||||||   |||||        |||||||                                                                 || || |||  |||| ||||||   ||||   
uugug auacgc gcu    uucauugcAC UCGGUUCCUGUUGAACGGcuag   uacua        aaagaaa                                                                 cc ga aua  acau uauaua   uaug  g
     g      -   gugu          A                      ---     acaaugaa       --------------------------------------------------------------aaa  a  -   ga    g      aau    uc 


Annotation confidence Not enough data
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Genome context
GL348715.1: 5439432-5439694 [-]

Database links

Mature aly-miR169a-5p

Accession MIMAT0017485
Description Arabidopsis lyrata aly-miR169a-5p mature miRNA
Sequence 27 - CAGCCAAGGAUGACUUGCCGA - 47
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR169a-3p

Accession MIMAT0017486
Description Arabidopsis lyrata aly-miR169a-3p mature miRNA
Sequence 216 - GGCAAGUUGUCCUUGGCUACA - 236
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103