miRBase entry: aly-MIR169b

Stem-loop aly-MIR169b


Accession
MI0014546
Description
Arabidopsis lyrata aly-MIR169b precursor miRNA
Gene family
MIPF0000037; MIR169_2


Sequence

4 reads, 139 reads per million, 1 experiments
gugcccaacggaguagaauugcaugaaguggaguagaguauaaugCAGCCAAGGAUGACUUGCCGGaacguuguuaaucauacguauaaauuaugugaugaacauauuucuGGCAAGUUGUCCUUCGGCUACAuuuugcucucuucuucucaugcaaacucucuuugggauau
...(((((.((((.((..((((((((...((((.((((((.((((.((((((((((((((((((((((...((((.(((..(((((.....)))))))).))))...)))))))))))))))))).)))).)))).))))))))))...)))))))).)))))))))))....

Structure
-gug     c    u  aa        agu    u      u    C    -                  cgu    a   au     u 
    cccaa ggag ag  uugcauga   ggag agagua aaug AGCC AAGGAUGACUUGCCGGaa   uguu auc  acgua a
    ||||| |||| ||  ||||||||   |||| |||||| |||| |||| ||||||||||||||||||   |||| |||  ||||| a
    ggguu ucuc uc  aacguacu   cuuc ucucgu uuAC UCGG UUCCUGUUGAACGGucuu   acaa uag  uguau a
uaua     -    -  -a        cuu    -      u    A    C                  uau    g   --     u 


Annotation confidence Not enough data
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Genome context
GL348718.1: 10974240-10974412 [+]

Database links

Mature aly-miR169b-5p

Accession MIMAT0017487
Description Arabidopsis lyrata aly-miR169b-5p mature miRNA
Sequence 46 - CAGCCAAGGAUGACUUGCCGG - 66
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR169b-3p

Accession MIMAT0017488
Description Arabidopsis lyrata aly-miR169b-3p mature miRNA
Sequence 112 - GGCAAGUUGUCCUUCGGCUACA - 133
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103