miRBase entry: aly-MIR172b

Stem-loop aly-MIR172b


Accession
MI0014564
Description
Arabidopsis lyrata aly-MIR172b precursor miRNA
Gene family
MIPF0000035; MIR172


Sequence

2736 reads, 95397 reads per million, 1 experiments
uagcucaucugucguuguuuguagguGCAGCACCAUCAAGAUUCACAugaaaauugauaaaucuccuaaauuaggguuuugauauguauaugAGAAUCUUGAUGAUGCUGCAUcaacaaucgacggcuacaaaauaccuaaagcug
(((((.....(((((((.((((.(((((((((.(((((((((((.((((.....((.((((.(.((((...))))).)))).))....)))).))))))))))).))))))))).)))).)))))))..............)))))

Structure
     ---------caucu       u    a         C           A    aaaau  a    u u    a 
uagcu              gucguug uugu gguGCAGCA CAUCAAGAUUC CAug     ug uaaa c ccua  
|||||              ||||||| |||| ||||||||| ||||||||||| ||||     || |||| | |||| a
gucga              cggcagc aaca cUACGUCGU GUAGUUCUAAG guau     au guuu g ggau  
     aauccauaaaacau       u    a         A           A    -augu  a    u -    u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL348718.1: 1397230-1397375 [-]

Database links

Mature aly-miR172b-5p

Accession MIMAT0017523
Description Arabidopsis lyrata aly-miR172b-5p mature miRNA
Sequence 27 - GCAGCACCAUCAAGAUUCACA - 47
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR172b-3p

Accession MIMAT0017524
Description Arabidopsis lyrata aly-miR172b-3p mature miRNA
Sequence 93 - AGAAUCUUGAUGAUGCUGCAU - 113
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103