miRBase entry: aly-MIR173a

Stem-loop aly-MIR173a


Accession
MI0014568
Description
Arabidopsis lyrata aly-MIR173a precursor miRNA
Gene family
MIPF0001175; MIR173


Sequence

191 reads, 6660 reads per million, 1 experiments
ggugacuaaguacuUUCGCUUGCAGAGAGAAAUCACaguggucaaaaguuaaagucucuuuccucuguGAUUCUCUGUGCAAGUGGAAGagcuugcuccc
((.((.(((((.((((((((((((.((((((.((((((.((...((((.........)))))).)))))))))))).)))))))))))).))))).))))

Structure
  u  c     a            G      A      u  uca    uua 
gg ga uaagu cuUUCGCUUGCA AGAGAA UCACag gg   aaag   a
|| || ||||| |||||||||||| |||||| |||||| ||   ||||   a
cc cu guucg GAAGGUGAACGU UCUCUU AGuguc cc   uuuc   g
  -  c     a            G      -      u  ---    ucu 


Annotation confidence High
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Genome context
GL348715.1: 10517134-10517233 [+]

Database links

Mature aly-miR173a-5p

Accession MIMAT0017531
Description Arabidopsis lyrata aly-miR173a-5p mature miRNA
Sequence 15 - UUCGCUUGCAGAGAGAAAUCAC - 36
Evidence experimental
Illumina [1], SOLiD [2]
Database links

Mature aly-miR173a-3p

Accession MIMAT0017532
Description Arabidopsis lyrata aly-miR173a-3p mature miRNA
Sequence 69 - GAUUCUCUGUGCAAGUGGAAG - 89
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103