miRBase entry: aly-MIR395c

Stem-loop aly-MIR395c


Accession
MI0014577
Description
Arabidopsis lyrata aly-MIR395c precursor miRNA
Gene family
MIPF0000016; MIR395


Sequence

augacagagcuacaagaagaaagucaaaugucuucaugaGUUCCCUUUAACGCUUCAUUGuuaauauucaaacuacauuuauuuccauaaauguuugaucgauuuguauauaacaCUGAAGUGUUUGGGGGGACUUuuggugucauucuggcguaguuacgauuau
((((..(((((((.........((((((((.(.(((.((((((((((.(((((((((.(((((((((((((...((((((((....)))))))))))).......)))).))))).))))))))).)))))))))).))).).)))).)))))))))).)..))))

Structure
    ca -      aagaagaaa    -    u u   u          U         U     -    -------    acu        u 
auga  g agcuac         guca aaug c uca gaGUUCCCUU AACGCUUCA UGuua auau       ucaa   acauuuau u
||||  | ||||||         |||| |||| | ||| |||||||||| ||||||||| ||||| ||||       ||||   ||||||||  
uauu  c uugaug         cggu uuac g ggu UUCAGGGGGG UUGUGAAGU acaau uaug       aguu   uguaaaua c
    ag a      ---------    c    u u   u          U         C     a    uuuagcu    ---        c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL348713.1: 10968022-10968187 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR395c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR395c-5p

Accession MIMAT0017549
Description Arabidopsis lyrata aly-miR395c-5p mature miRNA
Sequence 40 - GUUCCCUUUAACGCUUCAUUG - 60
Evidence experimental
Illumina [1]

Mature aly-miR395c-3p

Accession MIMAT0017550
Description Arabidopsis lyrata aly-miR395c-3p mature miRNA
Sequence 116 - CUGAAGUGUUUGGGGGGACUU - 136
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089