miRBase entry: aly-MIR398c

Stem-loop aly-MIR398c


Accession
MI0014587
Description
Arabidopsis lyrata aly-MIR398c precursor miRNA
Gene family
MIPF0000107; MIR398


Sequence

gguaguggaucucgacaGGGUCGACAUGAGAACAUAUGagcaaucaacggcuguaaaugacgcuacgucauuauuacaucucucgguuucaUGUGUUAACUCAGGUCACCCCUGcugagcucuuucucuacc
(((((.(((.((((.(((((..(((.(((((((((((((..((((...((.(((((((((((...))))))..))))).))...)))))))))))))..)))).)))..))))).)))).)))....)))))

Structure
     ---u   u    a     UC   A    --         gc    aac  c     --      c 
gguag    gga cucg caGGG  GAC UGAG  AACAUAUGa  aauc   gg uguaa  augacg  
|||||    ||| |||| |||||  ||| ||||  |||||||||  ||||   || |||||  |||||| u
ccauc    ucu gagu GUCCC  CUG ACUC  UUGUGUacu  uugg   uc acauu  uacugc  
     ucuu   c    c     CA   G    AA         --    cuc  u     au      a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL348718.1: 5880311-5880442 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR398c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR398c-5p

Accession MIMAT0017569
Description Arabidopsis lyrata aly-miR398c-5p mature miRNA
Sequence 18 - GGGUCGACAUGAGAACAUAUG - 38
Evidence experimental
Illumina [1]

Mature aly-miR398c-3p

Accession MIMAT0017570
Description Arabidopsis lyrata aly-miR398c-3p mature miRNA
Sequence 92 - UGUGUUAACUCAGGUCACCCCUG - 114
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089