miRBase entry: aly-MIR781

Stem-loop aly-MIR781


Accession
MI0014600
Description
Arabidopsis lyrata aly-MIR781 precursor miRNA
Gene family
MIPF0001137; MIR781


Sequence

guuucaauUUAGAGUUUUCUGGAUACUUAauaguuacuaacaaagaaaggguuucuucuauauuaacuucuaAGUAUCCAGAAAACUCUAAUUugaaac
(((((((.(((((((((((((((((((((..(((((.((...((((((...))))))...)).)))))..))))))))))))))))))))).)))))))

Structure
       u                     au     c  aca      g 
guuucaa UUAGAGUUUUCUGGAUACUUA  aguua ua   aagaaa  
||||||| |||||||||||||||||||||  ||||| ||   |||||| g
caaaguU AAUCUCAAAAGACCUAUGAau  ucaau au   uucuuu  
       U                     cu     u  auc      g 


Annotation confidence Not enough data
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Genome context
GL348713.1: 9134491-9134589 [+]

Database links

Mature aly-miR781-5p

Accession MIMAT0017597
Description Arabidopsis lyrata aly-miR781-5p mature miRNA
Sequence 9 - UUAGAGUUUUCUGGAUACUUA - 29
Evidence experimental
Illumina [1]

Mature aly-miR781-3p

Accession MIMAT0017598
Description Arabidopsis lyrata aly-miR781-3p mature miRNA
Sequence 73 - AGUAUCCAGAAAACUCUAAUU - 93
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089