Stem-loop aly-MIR823

Accession

MI0014602

Description

Arabidopsis lyrata aly-MIR823 precursor miRNA

Gene family

MIPF0001135; MIR823

Sequence

ggagaaagcuuuuuuuaagugaaaaauuucagggaugcuaauccaauagauggcggauacguuuuccaaucacgaauCUUGUAUGAUCACUAACCAUuggaaguaaaagaguauauaugacuucgaacgguuugcaauacggaggcucauagcaacccuuucuucuugcuaauauugcaacuugcaagccguucaaauuaaaauagucaucauuuaguucUAGGUUGGUGAUCAUAUAGGAUugguaacagugaaacauaucccccaucuaucgggauuaauuagugucccugaauagucgugagagaaccuuguuugugucuuu
.....(((.((((((((..(((.....(((((((((((((((((.((((((((.(((((.(((((......((.(((((((((((((((((((((..(((((.((((.((.......(((((..(((((((((((((...((..(((...)))..))........((((.......)))).)))))))))))))..........))))))).)))).)))))))))))))))))))))))))).))......))))).))))).))))))))..))))....)))))))))))))...))))))))))).)))............

Structure

-------ggaga   c        ag   aaaau             ----    -a        c     c     ccaauc  g                     AU     g    a  guauaua     --------uc             ---------------------uac  ag   c 
            aag uuuuuuua  uga     uucagggaugcua    aucc  auagaugg ggaua guuuu      ac aauCUUGUAUGAUCACUAACC  uggaa uaaa ga       ugacu          gaacgguuugcaa                        gg  gcu  
            ||| ||||||||  |||     |||||||||||||    ||||  |||||||| ||||| |||||      || |||||||||||||||||||||  ||||| |||| ||       |||||          |||||||||||||                        ||  ||| a
            uuc aagagagu  gcu     aagucccugugau    uagg  uaucuacc ccuau caaag      ug uUAGGAUAUACUAGUGGUUGG  AUcuu auuu cu       acuga          cuugccgaacguu                        cc  cga  
uuucuguguuug   c        --   --gau             uaau    gc        c     a     ugacaa  g                     --     g    a  -------     uaaaauuaaa             caacguuauaaucguucuucuuuc  aa   u 

Annotation confidence Not enough data

Genome context

GL348715.1: 5608850-5609174 [-]

Mature aly-miR823-5p

• Accession: MIMAT0017601
• Description: Arabidopsis lyrata aly-miR823-5p mature miRNA
• Sequence: 78 - CUUGUAUGAUCACUAACCAU - 97
• Evidence: experimental ; Illumina [1]

Mature aly-miR823-3p

• Accession: MIMAT0017602
• Description: Arabidopsis lyrata aly-miR823-3p mature miRNA
• Sequence: 221 - UAGGUUGGUGAUCAUAUAGGAU - 242
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20407027
   MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
   "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
   "Plant Cell (2010) 22:1074-1089