miRBase entry: aly-MIR827

Stem-loop aly-MIR827


Accession
MI0014605
Description
Arabidopsis lyrata aly-MIR827 precursor miRNA
Gene family
MIPF0001113; MIR827_3


Sequence

15 reads, 523 reads per million, 1 experiments
uacaucuuuaacuuccaugaaacauuauaggguuuuuucucucuugcaacccuugaaugugUUUGUUGAUUGACAUCUAUACauaucgauaauccuaucguguugauagaucgauugguUUAGAUGACCAUCAACAAACGcuuucgugguuuugcaucgcuucuugaaaucuugaucauguuuuuagcaucuuugua
..................(((((((..(((((((((........(((((.((.((((.((((((((((((.(.((((((.((..((((((....(((((.....)))))))))))..)).)))))).).)))))))))))).)))).))..))))).........)))))))))...)))))))..(((....))).

Structure
uacaucuuuaacuuccau       -ua         -uucucucu     -c  u    u            U A      U  au      aauc     g 
                  gaaacau   uaggguuuu         ugcaa  cc ugaa gugUUUGUUGAU G CAUCUA AC  aucgau    cuauc u
                  |||||||   |||||||||         |||||  || |||| |||||||||||| | |||||| ||  ||||||    ||||| g
                  uuuugua   guucuaaag         acguu  gg gcuu cGCAAACAACUA C GUAGAU ug  uagcua    gauag u
-----auguuucuacgau       cua         uucuucgcu     uu  u    u            C A      U  gu      ----     u 


Annotation confidence Not enough data
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Genome context
GL348717.1: 19566549-19566745 [-]

Database links

Mature aly-miR827-5p

Accession MIMAT0017607
Description Arabidopsis lyrata aly-miR827-5p mature miRNA
Sequence 62 - UUUGUUGAUUGACAUCUAUAC - 82
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR827-3p

Accession MIMAT0017608
Description Arabidopsis lyrata aly-miR827-3p mature miRNA
Sequence 120 - UUAGAUGACCAUCAACAAACG - 140
Evidence experimental
Illumina [1], SOLiD [2]
Database links

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103