miRBase entry: aly-MIR838

Stem-loop aly-MIR838


Accession
MI0014612
Description
Arabidopsis lyrata aly-MIR838 precursor miRNA
Gene family
MIPF0001184; MIR838


Sequence

2 reads, 70 reads per million, 1 experiments
gaggacuuccauggccucaauccaccuccgguguugUGCAAGAAUGAGAAGCAAAGCcugucuauguauugugagauaucuacuucuaugacuaggauauauguacaagaccggcUUUUCUUCUUCUUCUUGCACAaccugagguaauuggggcuauacaagucuuc
((((((((..(((((((((((..(((((.((.((((((((((((.((((((.((((((.((((.(((((......((((((.............))))))..))))))))).)))))).)))))).))))))))))))))))))).)))))))))))..))))))))

Structure
        cc           cc     c  u            U      C      u    a     ugugag      acuuc 
gaggacuu  auggccucaau  accuc gg guugUGCAAGAA GAGAAG AAAGCc gucu uguau      auaucu     u
||||||||  |||||||||||  ||||| || |||||||||||| |||||| |||||| |||| |||||      ||||||     a
cuucugaa  uaucgggguua  uggag uc caACACGUUCUU UUCUUC UUUcgg caga acaug      uauagg     u
        ca           -a     -  -            C      U      c    -     ----ua      aucag 


Annotation confidence Not enough data
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Genome context
GL348713.1: 513681-513847 [-]

Database links

Mature aly-miR838-5p

Accession MIMAT0017621
Description Arabidopsis lyrata aly-miR838-5p mature miRNA
Sequence 37 - UGCAAGAAUGAGAAGCAAAGC - 57
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR838-3p

Accession MIMAT0017622
Description Arabidopsis lyrata aly-miR838-3p mature miRNA
Sequence 116 - UUUUCUUCUUCUUCUUGCACA - 136
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103