miRBase entry: aly-MIR395g

Stem-loop aly-MIR395g


Accession
MI0014634
Description
Arabidopsis lyrata aly-MIR395g precursor miRNA
Gene family
MIPF0000016; MIR395


Sequence

gucggauguucccuagaGUUCCUCUGAGCACUUCAUUGgagauaccauugucuaugaaauaguauucuaCUGAAGUGUUUGGGGGAACUCcuggacucauucgau
((((((((...((..((((((((((((((((((((.(((((.(((.(((........))).)))))))).))))))))))))))))))))..))...))))))))

Structure
        uuc  ua                    U     a   c   guc 
gucggaug   cc  gaGUUCCUCUGAGCACUUCA UGgag uac auu   u
||||||||   ||  |||||||||||||||||||| ||||| ||| |||    
uagcuuac   gg  CUCAAGGGGGUUUGUGAAGU aucuu aug uaa   a
        uca  uc                    C     -   a   agu 


Annotation confidence Not enough data
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Genome context
GL348714.1: 14005416-14005520 [-]
Clustered miRNAs
4 other miRNAs are < 10 kb from aly-MIR395g
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR395g-5p

Accession MIMAT0017665
Description Arabidopsis lyrata aly-miR395g-5p mature miRNA
Sequence 18 - GUUCCUCUGAGCACUUCAUUG - 38
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR395g-3p

Accession MIMAT0017666
Description Arabidopsis lyrata aly-miR395g-3p mature miRNA
Sequence 70 - CUGAAGUGUUUGGGGGAACUC - 90
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103