miRBase entry: aly-MIR158b

Stem-loop aly-MIR158b


Accession
MI0014639
Description
Arabidopsis lyrata aly-MIR158b precursor miRNA
Gene family
MIPF0000294; MIR158


Sequence

35 reads, 1220 reads per million, 1 experiments
ucagaagaauaguaacucgucaucucugugccucUUUGUCUACAAUUUUGGAAAaaguagugucgccauuguuuuuuUCCCAAAUGUAGACAAAGCgauaccgugaugacguuauagagauuuuguuuga
((((((((((.......(((((((.(.(((.(.(((((((((((.(((.((((((((.((((....))))..)))))))).)))))))))))))).).))).).)))))))........))))).)))))

Structure
     -     -aguaacu       u u   c u           A   U        -u    u 
ucaga agaau        cgucauc c gug c cUUUGUCUACA UUU GGAAAaag  agug c
||||| |||||        ||||||| | ||| | ||||||||||| ||| ||||||||  ||||  
aguuu uuuua        gcaguag g cau g GAAACAGAUGU AAA CCUuuuuu  uuac g
     g     gagauauu       u c   a C           -   C        ug    c 


Annotation confidence Not enough data
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Genome context
GL348713.1: 29396569-29396698 [+]

Database links

Mature aly-miR158b-5p

Accession MIMAT0017675
Description Arabidopsis lyrata aly-miR158b-5p mature miRNA
Sequence 35 - UUUGUCUACAAUUUUGGAAA - 54
Evidence experimental
Illumina [1]
Database links

Mature aly-miR158b-3p

Accession MIMAT0017676
Description Arabidopsis lyrata aly-miR158b-3p mature miRNA
Sequence 78 - UCCCAAAUGUAGACAAAGC - 96
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089