miRBase entry: aly-MIR851

Stem-loop aly-MIR851


Accession
MI0014646
Description
Arabidopsis lyrata aly-MIR851 precursor miRNA
Gene family
MIPF0001168; MIR851


Sequence

agggacugUGGUCUUUGUUUGCGACCCAUACGuaaucuuuugugagagacuacgUGUGGGUGGCAAACAAAGACGACAaucccu
(((((.(((.((((((((((((.(((((((((((.(((((....))))).))))))))))).)))))))))))).))).)))))

Structure
     c   G            G           a     u 
aggga ugU GUCUUUGUUUGC ACCCAUACGua ucuuu g
||||| ||| |||||||||||| ||||||||||| |||||  
ucccu ACA CAGAAACAAACG UGGGUGUgcau agaga u
     a   G            G           c     g 


Annotation confidence Not enough data
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Genome context
GL348717.1: 16404386-16404469 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from aly-MIR851
Name Accession Chromosome Start End Strand Confidence




Database links

Mature aly-miR851-5p

Accession MIMAT0017691
Description Arabidopsis lyrata aly-miR851-5p mature miRNA
Sequence 9 - UGGUCUUUGUUUGCGACCCAUACG - 32
Evidence experimental
Illumina [1], SOLiD [2]

Mature aly-miR851-3p

Accession MIMAT0017692
Description Arabidopsis lyrata aly-miR851-3p mature miRNA
Sequence 55 - UGUGGGUGGCAAACAAAGACGACA - 78
Evidence experimental
Illumina [1], SOLiD [2]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089

  2. PubMed ID: 20407023
    Arabidopsis lyrata small RNAs: transient MIRNA and small interfering RNA loci within the Arabidopsis genus
    "Ma Z, Coruh C, Axtell MJ"
    "Plant Cell (2010) 22:1090-1103