miRBase entry: aly-MIR3434

Stem-loop aly-MIR3434


Accession
MI0014649
Description
Arabidopsis lyrata aly-MIR3434 precursor miRNA
Gene family
MIPF0001174; MIR3434


Sequence

12 reads, 418 reads per million, 1 experiments
gcggauaacaccuuaaggaaggauuguuuuuguuuuauagguuaacuguggugguaaauuuuagcacucgGCUGAUUCUCUGAUUUUGAACagggcuuccuuaagucagaucauuggucucucucucaaguaacuuaggguuugaaaaacagcuucuccagucagcaucuuacccugcuccucaacacucagcaaauccacaaauagaaacgagucguugcuucggaaagccuuguUCAAAAUCAGAGAAUCAACCAagugauaaaauuuaccaccacaguuaaccuauaaaacaaaaacaauccuuccuuaaguuguuguugc
(((.((((((.((((((((((((((((((((((((((((((((((((((((((((((((((((.((((.((.((((((((((((((((((((((((((((...((..(((((...)))))..))...........((((((..((......(((.....))).....))..)))))).....((((((((.....................)))).))))....)).)))))))))))))))))))))))))).)).)))).)))))))))))))))))))))))))))))))))))))))))))))))))))).)))))))))

Structure
   g      c                                                    g    c  C                          -  ------------uuaagucagaucauuggucucucucucaaguaacu      uu  aaaaca   u 
gcg auaaca cuuaaggaaggauuguuuuuguuuuauagguuaacuguggugguaaauuuua cacu gG UGAUUCUCUGAUUUUGAACagggcuu cc                                               uagggu  ga      gcu c
||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| ||                                               ||||||  ||      ||| u
cgu uguugu gaauuccuuccuaacaaaaacaaaauauccaauugacaccaccauuuaaaau guga CC ACUAAGAGACUAAAACUuguuccgaa gg                                               guccca  cu      uga c
   -      u                                                    a    A  A                          a  cuucguugcugagcaaagauaaacaccuaaacgacucacaacuccuc      uu  -acgac   c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL348718.1: 9536201-9536524 [-]

Database links

Mature aly-miR3434-5p

Accession MIMAT0017697
Description Arabidopsis lyrata aly-miR3434-5p mature miRNA
Sequence 71 - GCUGAUUCUCUGAUUUUGAAC - 91
Evidence experimental
Illumina [1]

Mature aly-miR3434-3p

Accession MIMAT0017698
Description Arabidopsis lyrata aly-miR3434-3p mature miRNA
Sequence 237 - UCAAAAUCAGAGAAUCAACCA - 257
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089