miRBase entry: aly-MIR3444a

Stem-loop aly-MIR3444a


Accession
MI0014660
Description
Arabidopsis lyrata aly-MIR3444a precursor miRNA
Gene family
MIPF0001177; MIR3444


Sequence

9 reads, 314 reads per million, 1 experiments
uauguauccuuuguaaucucuuuauaUUGGGAGCUCGAUGAGAUCGAcccuaaccgagccuagauaucgagauuugguucgggucAAUCUCAUCAAUCUCCCAAUAcuuuacaacauauaua
(((((((...((((((........(((((((((...((((((((.(((((.(((((((.((........)).))))))).))))).))))))))...)))))))))..)))))).)))))))

Structure
       ccu      ucucuuua         CUC        C     u       c  aga 
uauguau   uuguaa        uaUUGGGAG   GAUGAGAU GAccc aaccgag cu   u
|||||||   ||||||        |||||||||   |||||||| ||||| ||||||| ||    
auauaua   aacauu        AUAACCCUC   CUACUCUA cuggg uugguuu ga   a
       --c      ------uc         UAA        A     c       a  gcu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
GL348720.1: 18879825-18879946 [+]

Database links

Mature aly-miR3444a-5p

Accession MIMAT0017721
Description Arabidopsis lyrata aly-miR3444a-5p mature miRNA
Sequence 27 - UUGGGAGCUCGAUGAGAUCGA - 47
Evidence experimental
Illumina [1]

Mature aly-miR3444a-3p

Accession MIMAT0017722
Description Arabidopsis lyrata aly-miR3444a-3p mature miRNA
Sequence 86 - AAUCUCAUCAAUCUCCCAAUA - 106
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089