miRBase entry: ath-MIR3434

Stem-loop ath-MIR3434


Accession
MI0014667
Description
Arabidopsis thaliana ath-MIR3434 precursor miRNA
Gene family
MIPF0001174; MIR3434


Sequence

aaauuccuuauauugcagauaacaccuuaaggaagguuuguuuuuguuuuacagguuaacuguggugguaaauuuuaucACUUGGCUGAUUCUAUUAUUuugagcaaggcuuccuaaagucagaucauuggucucucucucaaguaacuuagguuugaaaaagcagcuucuccagucagcaucuuacccuucucacuacucagcaaauccacaaauagaaacgagucguugcuucggaagccuuguucaaaaUCAGAGUAUCAGCCAUGUGAuaaaauuaacaaccagaguuaacauauaaaacuaaaacaauccuuccuuaaguuguuguugcuuaauuugggaauuu
((((((((......(((.((((((.(((((((((((.(((((((.((((((...(((((((.((((.((.(((((((((((.((((((((.((...((((((((((((((((((.....(((((((...(((..((......))..)))..)))))))..(((((((..(((...((........................................))...)))..))))))).))))))))))))))))))...)).)))))))).))))))))))).)).)))).)))))))...)))))).))))))).))))))))))).))))))))).......))))))))

Structure
        -uauauu   g      c           u       u      cag       g    g  a           U        U  AUU                  ------------------------------------------------------------------------uaaag       auu   cu  cu 
aaauuccu       gca auaaca cuuaaggaagg uuguuuu guuuua   guuaacu uggu gu aauuuuaucAC UGGCUGAU CU   AUUuugagcaaggcuucc                                                                             ucagauc   ggu  cu  c
||||||||       ||| |||||| ||||||||||| ||||||| ||||||   ||||||| |||| || ||||||||||| |||||||| ||   ||||||||||||||||||                                                                             |||||||   |||  ||   
uuuaaggg       cgu uguugu gaauuccuucc aacaaaa caaaau   caauuga acca ca uuaaaauAGUG ACCGACUA GA   Uaaaacuuguuccgaagg                                                                             aguuugg   uca  ga  u
        uuuaauu   -      u           u       u      aua       g    a  a           U        U  GAC                  cuucguugcugagcaaagauaaacaccuaaacgacucaucacucuucccauucuacgacugaccucuucgacgaaaa       -au   au  ac 


Annotation confidence Not enough data
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Genome context
chr5: 7583055-7583403 [-]

Database links

Mature ath-miR3434-5p

Accession MIMAT0017737
Description Arabidopsis thaliana ath-miR3434-5p mature miRNA
Sequence 80 - ACUUGGCUGAUUCUAUUAUU - 99
Evidence experimental
Illumina [1]

Mature ath-miR3434-3p

Accession MIMAT0017738
Description Arabidopsis thaliana ath-miR3434-3p mature miRNA
Sequence 253 - UCAGAGUAUCAGCCAUGUGA - 272
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20407027
    MicroRNA gene evolution in Arabidopsis lyrata and Arabidopsis thaliana
    "Fahlgren N, Jogdeo S, Kasschau KD, Sullivan CM, Chapman EJ, Laubinger S, Smith LM, Dasenko M, Givan SA, Weigel D, Carrington JC"
    "Plant Cell (2010) 22:1074-1089