miRBase entry: ssc-mir-338

Stem-loop ssc-mir-338


Accession
MI0014773
Description
Sus scrofa ssc-mir-338 precursor miRNA
Gene family
MIPF0000097; mir-338

Literature search
5 open access papers mention ssc-mir-338
(12 sentences)

Sequence

1 reads, 4 reads per million, 1 experiments
ccguccuccccaacaauauccuggugcugagugaugacacacgcaacUCCAGCAUCAGUGAUUUUGUUGaagagggcag
..((((((..((((((.(((((((((((((((..((.....))..))).))))))))).))).))))))..))))))..

Structure
cc      cc      u   -         -   ga  a 
  guccuc  caacaa auc cuggugcug agu  ug c
  ||||||  |||||| ||| ||||||||| |||  || a
  cgggag  GUUGUU UAG GACUACGAC Uca  gc c
ga      aa      U   U         C   ac  a 


Annotation confidence Not enough data
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Genome context
chr12: 1507084-1507162 [+]

Database links

Mature ssc-miR-338

Accession MIMAT0015713
Description Sus scrofa ssc-miR-338 mature miRNA
Sequence 48 - UCCAGCAUCAGUGAUUUUGUUG - 69
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  2. PubMed ID: 24499489
    Exploration of microRNAs in porcine milk exosomes
    Chen T, Xi QY, Ye RS, Cheng X, Qi QE, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Zhang YL
    BMC Genomics (2014) 15:100