miRBase entry: ssc-mir-376a

Stem-loop ssc-mir-376a


Accession
MI0014775
Description
Sus scrofa ssc-mir-376a precursor miRNA
Gene family
MIPF0000091; mir-368

Literature search
4 open access papers mention ssc-mir-376a
(5 sentences)

Sequence

gguauuuaaaagGUAGAUUCUCCUUCUAUGAGUACauuauuuauuauuaAUCAUAGAGGAAAAUCCACGUuuucaguauc
((((((.((((.((.((((.((((.((((((...................)))))))))).)))).)).)))).))))))

Structure
      u    g  A    C    U      GUACauua 
gguauu aaaa GU GAUU UCCU CUAUGA        u
|||||| |||| || |||| |||| ||||||        u
cuauga uuuU CA CUAA AGGA GAUACU        u
      c    G  C    A    -      Aauuauua 


Annotation confidence Not enough data
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Genome context
chrUScaf2115: 30857-30936 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from ssc-mir-376a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-376a-5p

Accession MIMAT0015715
Description Sus scrofa ssc-miR-376a-5p mature miRNA
Sequence 13 - GUAGAUUCUCCUUCUAUGAGUAC - 35
Evidence experimental
cloned [1]

Mature ssc-miR-376a-3p

Accession MIMAT0015716
Description Sus scrofa ssc-miR-376a-3p mature miRNA
Sequence 50 - AUCAUAGAGGAAAAUCCACGU - 70
Evidence not_experimental

References

  1. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574