miRBase entry: ssc-mir-450c

Stem-loop ssc-mir-450c


Accession
MI0014776
Description
Sus scrofa ssc-mir-450c precursor miRNA
Gene family
MIPF0000128; mir-450

Literature search
4 open access papers mention ssc-mir-450c
(4 sentences)

Sequence

430 reads, 169 reads per million, 12 experiments
ggcacuaaacuauUUUUGCGAUGUGUUCCUAAUACguaaucuaaguguAUUGGGAACAUUUUGCAUUCGUaguuuuguguc
(((((.(((((((...(((((.((((((((((((((.........)))))))))))))).)))))...))))))).)))))

Structure
     u       UUU     U              uaa 
ggcac aaacuau   UGCGA GUGUUCCUAAUACg   u
||||| |||||||   ||||| ||||||||||||||   c
cugug uuugaUG   ACGUU UACAAGGGUUAugu   u
     u       CUU     U              gaa 


Annotation confidence Not enough data
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Genome context
chrUScaf3177: 4053-4133 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from ssc-mir-450c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ssc-miR-450c-5p

Accession MIMAT0015717
Description Sus scrofa ssc-miR-450c-5p mature miRNA
Sequence 14 - UUUUGCGAUGUGUUCCUAAUAC - 35
Evidence experimental
Illumina [2]

Mature ssc-miR-450c-3p

Accession MIMAT0015718
Description Sus scrofa ssc-miR-450c-3p mature miRNA
Sequence 49 - AUUGGGAACAUUUUGCAUUCGU - 70
Evidence experimental
cloned [1], Illumina [2]

References

  1. PubMed ID: 20180025
    Cloning and characterization of microRNAs from porcine skeletal muscle and adipose tissue
    "Cho IS, Kim J, Seo HY, Lim DH, Hong JS, Park YH, Park DC, Hong KC, Whang KY, Lee YS"
    "Mol Biol Rep (2010) 37:3567-3574

  2. PubMed ID: 21312241
    MicroRNA identity and abundance in developing swine adipose tissue as determined by Solexa sequencing
    "Li G, Li Y, Li X, Ning X, Li M, Yang G"
    "J Cell Biochem (2011) 112:1318-1328