miRBase entry: ppy-let-7d

Stem-loop ppy-let-7d


Accession
MI0014784
Description
Pongo pygmaeus ppy-let-7d precursor miRNA
Gene family
MIPF0000002; let-7

Literature search
2 open access papers mention ppy-let-7d
(4 sentences)

Sequence

ccuaggaAGAGGUAGUAGGUUGCAUAGUUuuagggcagggauuuugcccacaaggagguaacuauacgaccugcugccuuucuuagg
(((((((.((((((((((((((.((((((...((((((.....))))))..........)))))).)))))))))))))))))))))

Structure
       A              C      -------uua      g 
ccuagga GAGGUAGUAGGUUG AUAGUU          gggcag g
||||||| |||||||||||||| ||||||          |||||| a
ggauucu uuccgucguccagc uaucaa          cccguu u
       -              a      uggaggaaca      u 


Annotation confidence Not enough data
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Genome context
chr9: 89897633-89897719 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from ppy-let-7d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ppy-let-7d

Accession MIMAT0015724
Description Pongo pygmaeus ppy-let-7d mature miRNA
Sequence 8 - AGAGGUAGUAGGUUGCAUAGUU - 29
Evidence not_experimental

References

  1. PubMed ID: 20214803
    Genome-wide comparative analysis of microRNAs in three non-human primates
    Brameier M
    BMC Res Notes (2010) 3:64