miRBase entry: ppy-let-7e

Stem-loop ppy-let-7e

Accession

MI0014785

Description

Pongo pygmaeus ppy-let-7e precursor miRNA

Gene family

MIPF0000002; let-7

Literature search

2 open access papers mention ppy-let-7e
(4 sentences)

Sequence

cccgggcUGAGGUAGGAGGUUGUAUAGUUgaggaggacacccaaggagaucacuauacggccuccuagcuuuccccagg
((.(((..(((.((((((((((((((((.((((.(....))).......)))))))))))))))))).)))..))).))

Structure

  c   cU   G                U  -------  a g 
cc ggg  GAG UAGGAGGUUGUAUAGU ga       gg g a
|| |||  ||| |||||||||||||||| ||       || |  
gg ccc  uuc auccuccggcauauca cu       cc c c
  a   cu   g                -  agaggaa  - a

Annotation confidence Not enough data

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Genome context

chr19: 53226596-53226674 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppy-let-7e

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ppy-let-7e

Accession	MIMAT0015725
Description	Pongo pygmaeus ppy-let-7e mature miRNA
Sequence	8 - UGAGGUAGGAGGUUGUAUAGUU - 29
Evidence	not_experimental

References

PubMed ID: 20214803
Genome-wide comparative analysis of microRNAs in three non-human primates
Brameier M
BMC Res Notes (2010) 3:64