miRBase entry: sja-mir-7

Stem-loop sja-mir-7


Accession
MI0015285
Description
Schistosoma japonicum sja-mir-7 precursor miRNA

Literature search
7 open access papers mention sja-mir-7
(61 sentences)

Sequence

auguugccguugcuuaaucaUGGAAGACUGGUGAUAUGUUGUUgauugaugaaaguuuuaaguauuucauaauuuaaagcuucaucaaaacaaugauauuacgaaCAACUUAUCGCAUUCUUCCAUGuaugcaauagguugaacuuc
..(((((((((((.....(((((((((...((((((.((((((..((((((((.(((((((((........)))))))))))))))))...............)))))).))))))..)))))))))...))))).)))..)))...

Structure
-au   --   -     uuaau         CUG      U      -------------ga        a         auu 
   guu  gcc guugc     caUGGAAGA   GUGAUA GUUGUU               uugaugaa guuuuaagu   u
   |||  ||| |||||     |||||||||   |||||| ||||||               |||||||| |||||||||    
   caa  ugg uaacg     GUACCUUCU   CGCUAU CAACaa               aacuacuu cgaaauuua   c
cuu   gu   a     --uau         -UA      U      gcauuauaguaacaa        -         aua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CABF01039688.1: 5408-5554 [+]

Database links

Mature sja-miR-7-5p

Accession MIMAT0016249
Description Schistosoma japonicum sja-miR-7-5p mature miRNA
Sequence 21 - UGGAAGACUGGUGAUAUGUUGUU - 43
Evidence experimental
Illumina [1]

Mature sja-miR-7-3p

Accession MIMAT0016250
Description Schistosoma japonicum sja-miR-7-3p mature miRNA
Sequence 106 - CAACUUAUCGCAUUCUUCCAUG - 127
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596