Stem-loop sequence sja-mir-7

Accession

MI0015285 (change log)

Description

Schistosoma japonicum miR-7 stem-loop

Literature search

7 open access papers mention sja-mir-7
(36 sentences)

Stem-loop

   -au   --   -     uuaau         cug      u      gauugaugaaaguuuuaaguauuucauaa 
5'    guu  gcc guugc     cauggaaga   gugaua guuguu                             u
      |||  ||| |||||     |||||||||   |||||| ||||||                              
3'    caa  ugg uaacg     guaccuucu   cgcuau caacaa                             u
   cuu   gu   a     --uau         -ua      u      gcauuauaguaacaaaacuacuucgaaau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15177v1; GCA_000151775.1): CABF01039688.1: 5408-5554 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0015285

Mature sequence sja-miR-7-5p

• Accession: MIMAT0016249
• Sequence: 21 - uggaagacuggugauauguuguu - 43
• Evidence: experimental; Illumina [1]

Mature sequence sja-miR-7-3p

• Accession: MIMAT0016250
• Sequence: 106 - caacuuaucgcauucuuccaug - 127
• Evidence: experimental; Illumina [1]

References

1. PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).