Stem-loop sequence sja-mir-8

Accession

MI0015286 (change log)

Description

Schistosoma japonicum miR-8 stem-loop

Gene family

MIPF0000019; mir-8

Literature search

4 open access papers mention sja-mir-8
(16 sentences)

Stem-loop

   ---a     a         --a           u  uaaa 
5'     ugagu uggcaucuu   cuaauaguauu ga    g
       ||||| |||||||||   ||||||||||| ||     
3'     acucg accguagaa   gauugucauaa cu    a
   cuuc     -         aug           u  uuua 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15177v1; GCA_000151775.1): CABF01051237.1: 644-719 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0015286

Mature sequence sja-miR-8-5p

• Accession: MIMAT0016251
• Sequence: 11 - caucuuacuaauaguauuuga - 31
• Evidence: experimental; Illumina [1]

Mature sequence sja-miR-8-3p

• Accession: MIMAT0016252
• Sequence: 44 - uaauacuguuagguaaagaugcc - 66
• Evidence: experimental; Illumina [1]

References

1. PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).