miRBase entry: sja-mir-10

Stem-loop sja-mir-10


Accession
MI0015287
Description
Schistosoma japonicum sja-mir-10 precursor miRNA
Gene family
MIPF0000033; mir-10

Literature search
8 open access papers mention sja-mir-10
(22 sentences)

Sequence

ccucaguaugAACCCUGUAGACCCGAGUUUGGaugccguuagaugcAAAUUCGAGUCUAUAAGGAAAGAuacuuuggaa
((..(((((...((.(((((((.((((((((.((........)).)))))))).))))))).))....)))))..))..

Structure
--  uc     -gAA  C       C        G  gcc 
  cc  aguau    CC UGUAGAC CGAGUUUG au   g
  ||  |||||    || ||||||| |||||||| ||    
  gg  ucauA    GG AUAUCUG GCUUAAAc ua   u
aa  uu     GAAA  A       A        g  gau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CABF01007487.1: 6178-6256 [+]

Database links

Mature sja-miR-10-5p

Accession MIMAT0016253
Description Schistosoma japonicum sja-miR-10-5p mature miRNA
Sequence 11 - AACCCUGUAGACCCGAGUUUGG - 32
Evidence experimental
Illumina [1]

Mature sja-miR-10-3p

Accession MIMAT0016254
Description Schistosoma japonicum sja-miR-10-3p mature miRNA
Sequence 47 - AAAUUCGAGUCUAUAAGGAAAGA - 69
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596