miRBase entry: sja-mir-71b

Stem-loop sja-mir-71b


Accession
MI0015291
Description
Schistosoma japonicum sja-mir-71b precursor miRNA
Gene family
MIPF0000278; mir-71

Literature search
17 open access papers mention sja-mir-71b
(122 sentences)

Sequence

ccguuugcugUGAAAGACUUGAGUAGUGAGACGcuuauagcguuguugucugcgguucggcgCCUCAUACUAAGUCUUUCCCGgcucacuggc
((((..((((.(((((((((.((((.((((.((((...(.(((........))).)..)))).))))))))))))))))).))))..)).)).

Structure
-  -  uu    U         G    G    A    uau g   ugu 
 cc gu  gcug GAAAGACUU AGUA UGAG CGcu   a cgu   u
 || ||  |||| ||||||||| |||| |||| ||||   | |||    
 gg ca  cgGC CUUUCUGAA UCAU ACUC gcgg   u gcg   g
c  u  cu    C         -    -    C    -cu g   ucu 


Annotation confidence Not enough data
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Genome context
CABF01011791.1: 2817-2909 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from sja-mir-71b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature sja-miR-71b-5p

Accession MIMAT0016260
Description Schistosoma japonicum sja-miR-71b-5p mature miRNA
Sequence 11 - UGAAAGACUUGAGUAGUGAGACG - 33
Evidence experimental
Illumina [1]

Mature sja-miR-71b-3p

Accession MIMAT0016261
Description Schistosoma japonicum sja-miR-71b-3p mature miRNA
Sequence 63 - CCUCAUACUAAGUCUUUCCCG - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596