Stem-loop sequence sja-mir-219

Accession

MI0015295 (change log)

Description

Schistosoma japonicum miR-219 stem-loop

Gene family

MIPF0000044; mir-219

Literature search

3 open access papers mention sja-mir-219
(5 sentences)

Stem-loop

   ucu    ---ac        cac    u       c           uagaaacauuuucaauuauuaucauua 
5'    guga     aaucgauu   ugau guccauu gcauuucuugu                           u
      ||||     ||||||||   |||| ||||||| |||||||||||                           u
3'    uacu     uuagcuag   acua cagguaa uguggagaaca                           c
   -uc    aauua        uau    -       u           cuuaauuuauaauaguaguaauaguaa 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (ASM15177v1; GCA_000151775.1): CABF01007005.1: 4661-4806 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0015295

Mature sequence sja-miR-219-5p

• Accession: MIMAT0016267
• Sequence: 21 - ugauuguccauucgcauuucu - 41
• Evidence: experimental; Illumina [1]

Mature sequence sja-miR-219-3p

• Accession: MIMAT0016268
• Sequence: 105 - agagguguuaauggacaucaua - 126
• Evidence: experimental; Illumina [1]

References

1. PMID:20161724 "An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum" Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W PLoS Negl Trop Dis. 4:e596(2010).