Stem-loop sja-mir-3479

Accession

MI0015300

Description

Schistosoma japonicum sja-mir-3479 precursor miRNA

Gene family

MIPF0001629; mir-3479

Literature search

5 open access papers mention sja-mir-3479
(35 sentences)

Sequence

cauguuugugAGGUGGAUGUUAGUGCAAUUUAgugacguaaauaUAUUGCACUUACCUUCGCCUUGcaaauauagg
.((((((((((((((((.((.((((((((.((..........)).)))))))).)).))))))))))))))))...

Structure

--c                U  U        U  guga 
   auguuugugAGGUGGA GU AGUGCAAU UA    c
   |||||||||||||||| || |||||||| ||     
   uauaaacGUUCCGCUU CA UCACGUUA au    g
gga                C  U        U  aaau 

Annotation confidence Not enough data

Genome context

CABF01007794.1: 10259-10334 [-]

Mature sja-miR-3479-5p

• Accession: MIMAT0016274
• Description: Schistosoma japonicum sja-miR-3479-5p mature miRNA
• Sequence: 11 - AGGUGGAUGUUAGUGCAAUUUA - 32
• Evidence: experimental ; Illumina [1]

Mature sja-miR-3479-3p

• Accession: MIMAT0016275
• Description: Schistosoma japonicum sja-miR-3479-3p mature miRNA
• Sequence: 45 - UAUUGCACUUACCUUCGCCUUG - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 20161724
   An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
   Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
   PLoS Negl Trop Dis (2010) 4:e596