miRBase entry: sja-mir-3485

Stem-loop sja-mir-3485


Accession
MI0015308
Description
Schistosoma japonicum sja-mir-3485 precursor miRNA


Sequence

ggcuuuuaccaacuuGCGUCACUUGUGGUGUAGGCGAgacauucGUUUACUGACGAAAGGACGCAUuuacugugca
((......))....((((((..((((.(.((((((((.....))))))))).))))...))))))...........

Structure
ggcuuuuaccaacu      -AC    G U        g 
              uGCGUC   UUGU G GUAGGCGA a
              ||||||   |||| | |||||||| c
              ACGCAG   AGCA U CAUUUGcu a
---acgugucauuU      GAA    G -        u 


Annotation confidence Not enough data
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Genome context
CABF01014360.1: 997-1072 [+]

Database links

Mature sja-miR-3485-5p

Accession MIMAT0016290
Description Schistosoma japonicum sja-miR-3485-5p mature miRNA
Sequence 16 - GCGUCACUUGUGGUGUAGGCGA - 37
Evidence experimental
Illumina [1]

Mature sja-miR-3485-3p

Accession MIMAT0016291
Description Schistosoma japonicum sja-miR-3485-3p mature miRNA
Sequence 45 - GUUUACUGACGAAAGGACGCAU - 66
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20161724
    An "in-depth" description of the small non-coding RNA population of Schistosoma japonicum schistosomulum
    Wang Z, Xue X, Sun J, Luo R, Xu X, Jiang Y, Zhang Q, Pan W
    PLoS Negl Trop Dis (2010) 4:e596